PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000088.1_g00022.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 159aa    MW: 17099.8 Da    PI: 4.8268
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000088.1_g00022.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.94.4e-222070255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr+++ +g+++AeIrdp+ ng  +r++lg++gtaeeAa+a+++a+ +++g
  Itr_sc000088.1_g00022.1 20 KYRGVRRRP-WGKYAAEIRDPNRNG--ARVWLGTYGTAEEAARAYDRAAHQMRG 70
                             8********.**********96665..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.2892078IPR001471AP2/ERF domain
PfamPF008472.5E-162070IPR001471AP2/ERF domain
CDDcd000182.83E-292080No hitNo description
SMARTSM003801.9E-352084IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-242079IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-312079IPR001471AP2/ERF domain
PRINTSPR003673.6E-112132IPR001471AP2/ERF domain
PRINTSPR003673.6E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDEDRGGGGD GKKEGEAEVK YRGVRRRPWG KYAAEIRDPN RNGARVWLGT YGTAEEAARA  60
YDRAAHQMRG KFAVLNFPED YPSPQVVTSA SPSDPISHVA SASPSTASSS GGAAVENVGK  120
GSVEEGGETT KEVIEFECLD DKLLEDLLGC HDTEEPKKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-262178663ATERF1
3gcc_A1e-262178663ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016441045.15e-42PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC55e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A151T1811e-41A0A151T181_CAJCA; Ethylene-responsive transcription factor ERF098 family
TrEMBLI1NI289e-42I1NI28_SOYBN; Uncharacterized protein
STRINGGLYMA20G34560.12e-41(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-22ERF family protein